J4_9MQ4_001

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9MQ4|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9MQ4_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1269

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9MQ4|1|1|C|268
9MQ4|1|1|C|269
*
9MQ4|1|1|G|370
9MQ4|1|1|A|371
9MQ4|1|1|G|372
9MQ4|1|1|U|373
9MQ4|1|1|A|374
9MQ4|1|1|G|375
*
9MQ4|1|1|U|399
9MQ4|1|1|G|400
9MQ4|1|1|A|401
9MQ4|1|1|A|402
9MQ4|1|1|U|403
9MQ4|1|1|A|404
9MQ4|1|1|U|405
9MQ4|1|1|G|406
*
9MQ4|1|1|C|421
9MQ4|1|1|A|422
9MQ4|1|1|A|423
9MQ4|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein bL9

Chain X

50S ribosomal protein L28