J4_9MQ4_013

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9MQ4|1|2|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9MQ4_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1747

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9MQ4|1|2|G|142
9MQ4|1|2|A|143
9MQ4|1|2|G|144
*
9MQ4|1|2|C|178
9MQ4|1|2|A|179
9MQ4|1|2|U|180
9MQ4|1|2|A|181
9MQ4|1|2|A|182
9MQ4|1|2|C|183
9MQ4|1|2|G|184
*
9MQ4|1|2|C|193
9MQ4|1|2|C|194
9MQ4|1|2|A|195
9MQ4|1|2|A|196
9MQ4|1|2|A|197
9MQ4|1|2|G|198
*
9MQ4|1|2|U|219
9MQ4|1|2|G|220
9MQ4|1|2|C|221

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20