J4_9MTP_006

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

9MTP|1|1A|A|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9MTP_006 not in the Motif Atlas

Homologous match to J4_8B0X_010

Geometric discrepancy: 0.3493

The information below is about J4_8B0X_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9MTP|1|1A|G|1444
9MTP|1|1A|A|1445
9MTP|1|1A|C|1445|||A
*
9MTP|1|1A|G|1466
9MTP|1|1A|C|1467
*
9MTP|1|1A|G|1525
9MTP|1|1A|G|1526
*
9MTP|1|1A|C|1546
9MTP|1|1A|C|1547

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains