3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
9N2B|1|16|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9N2B_001 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.2905
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

9N2B|1|16|G|115
9N2B|1|16|A|116
9N2B|1|16|G|117
9N2B|1|16|U|118
9N2B|1|16|A|119
9N2B|1|16|A|120
9N2B|1|16|U|121
9N2B|1|16|G|122
*
9N2B|1|16|U|239
9N2B|1|16|G|240
*
9N2B|1|16|C|286
9N2B|1|16|U|287
9N2B|1|16|A|288
9N2B|1|16|G|289
*
9N2B|1|16|C|311
9N2B|1|16|C|312

Current chains

Chain 16
16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SP
30S ribosomal protein S16
Chain SQ
30S ribosomal protein S17

Coloring options:


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