J4_9N2B_001
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAGUAAUG*UG*CUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9N2B|1|16|U|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9N2B_001 not in the Motif Atlas
- Homologous match to J4_5J7L_001
- Geometric discrepancy: 0.2905
- The information below is about J4_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.3
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9N2B|1|16|G|115
9N2B|1|16|A|116
9N2B|1|16|G|117
9N2B|1|16|U|118
9N2B|1|16|A|119
9N2B|1|16|A|120
9N2B|1|16|U|121
9N2B|1|16|G|122
*
9N2B|1|16|U|239
9N2B|1|16|G|240
*
9N2B|1|16|C|286
9N2B|1|16|U|287
9N2B|1|16|A|288
9N2B|1|16|G|289
*
9N2B|1|16|C|311
9N2B|1|16|C|312
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain SP
- 30S ribosomal protein S16
- Chain SQ
- 30S ribosomal protein S17
Coloring options: