J4_9N2B_007

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9N2B|1|23|G|1271, 9N2B|1|23|A|1272, 9N2B|1|23|U|1273, 9N2B|1|23|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9N2B_007 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0556

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9N2B|1|23|C|1270
9N2B|1|23|G|1271
9N2B|1|23|A|1272
9N2B|1|23|U|1273
9N2B|1|23|A|1274
9N2B|1|23|A|1275
9N2B|1|23|A|1276
*
9N2B|1|23|U|1294
9N2B|1|23|C|1295
*
9N2B|1|23|G|1645
9N2B|1|23|C|1646
9N2B|1|23|U|1647
9N2B|1|23|U|1648
*
9N2B|1|23|A|2009
9N2B|1|23|G|2010

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LQ

50S ribosomal protein L17

Chain LV

Large ribosomal subunit protein uL22

Chain Lf

50S ribosomal protein L32