J4_9N2B_009

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9N2B|1|23|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9N2B_009 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0553

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9N2B|1|23|U|1313
9N2B|1|23|C|1314
*
9N2B|1|23|G|1338
9N2B|1|23|G|1339
9N2B|1|23|U|1340
9N2B|1|23|G|1341
9N2B|1|23|A|1342
9N2B|1|23|G|1343
*
9N2B|1|23|C|1404
9N2B|1|23|U|1405
*
9N2B|1|23|A|1597
9N2B|1|23|A|1598
9N2B|1|23|U|1599
9N2B|1|23|C|1600
9N2B|1|23|G|1601
9N2B|1|23|U|1602
9N2B|1|23|A|1603

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LW

50S ribosomal protein L23