J4_9N2B_012
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CU(2MG)*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9N2B|1|23|U|1971
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9N2B_012 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0902
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
9N2B|1|23|C|1833
9N2B|1|23|U|1834
9N2B|1|23|2MG|1835
*
9N2B|1|23|C|1905
9N2B|1|23|G|1906
*
9N2B|1|23|C|1924
9N2B|1|23|C|1925
9N2B|1|23|U|1926
9N2B|1|23|A|1927
9N2B|1|23|A|1928
9N2B|1|23|G|1929
9N2B|1|23|G|1930
9N2B|1|23|U|1931
9N2B|1|23|A|1932
9N2B|1|23|G|1933
*
9N2B|1|23|C|1967
9N2B|1|23|G|1968
9N2B|1|23|A|1969
9N2B|1|23|A|1970
9N2B|1|23|U|1971
9N2B|1|23|G|1972
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain 16
- Small subunit ribosomal RNA; SSU rRNA
- Chain LB
- 50S ribosomal protein L2
- Chain Pt
- Transfer RNA; tRNA
Coloring options: