J4_9N2B_014
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9N2B_014 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.054
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9N2B|1|23|G|2643
9N2B|1|23|G|2644
9N2B|1|23|G|2645
9N2B|1|23|C|2646
*
9N2B|1|23|G|2674
9N2B|1|23|A|2675
9N2B|1|23|C|2676
*
9N2B|1|23|G|2731
9N2B|1|23|G|2732
9N2B|1|23|A|2733
9N2B|1|23|A|2734
9N2B|1|23|G|2735
*
9N2B|1|23|U|2769
9N2B|1|23|G|2770
9N2B|1|23|C|2771
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LC
- 50S ribosomal protein L3
- Chain LM
- 50S ribosomal protein L13
- Chain LN
- 50S ribosomal protein L14
Coloring options: