J4_9N2C_002

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9N2C|1|16|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9N2C_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0875

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9N2C|1|16|G|142
9N2C|1|16|A|143
9N2C|1|16|G|144
*
9N2C|1|16|C|178
9N2C|1|16|A|179
9N2C|1|16|U|180
9N2C|1|16|A|181
9N2C|1|16|A|182
9N2C|1|16|C|183
9N2C|1|16|G|184
*
9N2C|1|16|C|193
9N2C|1|16|C|194
9N2C|1|16|A|195
9N2C|1|16|A|196
9N2C|1|16|A|197
9N2C|1|16|G|198
*
9N2C|1|16|U|219
9N2C|1|16|G|220
9N2C|1|16|C|221

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnH operon

Nearby chains

Chain ST

30S ribosomal protein S20