J4_9N2C_004

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9N2C|1|23|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9N2C_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1104

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9N2C|1|23|C|268
9N2C|1|23|C|269
*
9N2C|1|23|G|370
9N2C|1|23|A|371
9N2C|1|23|G|372
9N2C|1|23|U|373
9N2C|1|23|A|374
9N2C|1|23|G|375
*
9N2C|1|23|U|399
9N2C|1|23|G|400
9N2C|1|23|A|401
9N2C|1|23|A|402
9N2C|1|23|U|403
9N2C|1|23|A|404
9N2C|1|23|U|405
9N2C|1|23|G|406
*
9N2C|1|23|C|421
9N2C|1|23|A|422
9N2C|1|23|A|423
9N2C|1|23|G|424

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LI

50S ribosomal protein L9

Chain Lb

50S ribosomal protein L28