J4_9N76_001
3D structure
- PDB id
- 9N76 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SSU processome maturation and disassembly, State J
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 9N76|1|L1|A|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9N76_001 not in the Motif Atlas
- Homologous match to J4_9PN5_010
- Geometric discrepancy: 0.2022
- The information below is about J4_9PN5_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.5
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
9N76|1|L1|C|99
9N76|1|L1|A|100
9N76|1|L1|U|101
9N76|1|L1|U|102
9N76|1|L1|A|103
9N76|1|L1|A|104
9N76|1|L1|A|105
9N76|1|L1|U|106
9N76|1|L1|C|107
*
9N76|1|L1|G|307
9N76|1|L1|C|308
9N76|1|L1|C|309
*
9N76|1|L1|G|357
9N76|1|L1|U|358
9N76|1|L1|A|359
9N76|1|L1|A|360
9N76|1|L1|C|361
*
9N76|1|L1|G|383
9N76|1|L1|G|384
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L4
- 40S ribosomal protein S4-A
- Chain L8
- 40S ribosomal protein S8-A
- Chain LD
- 40S ribosomal protein S11-A
- Chain NS
- Probable ATP-dependent RNA helicase DHR1
- Chain SI
- Ribosome biogenesis protein BMS1
- Chain SR
- 40S ribosomal protein S23-A
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