J4_9NDP_001

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUAG*CGU*AAGGUCCUU*AUCC

Length

20 nucleotides

Bulged bases

9NDP|1|2|U|8, 9NDP|1|2|U|47, 9NDP|1|2|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|2|G|7
9NDP|1|2|U|8
9NDP|1|2|A|9
9NDP|1|2|G|10
*
9NDP|1|2|C|25
9NDP|1|2|G|26
9NDP|1|2|U|27
*
9NDP|1|2|A|43
9NDP|1|2|A|44
9NDP|1|2|G|45
9NDP|1|2|G|46
9NDP|1|2|U|47
9NDP|1|2|C|48
9NDP|1|2|C|49
9NDP|1|2|U|50
9NDP|1|2|U|51
*
9NDP|1|2|A|63
9NDP|1|2|U|64
9NDP|1|2|C|65
9NDP|1|2|C|66

Current chains

Chain 2

tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain I

60S ribosomal protein L10

Chain K

Small subunit ribosomal RNA; SSU rRNA