J4_9NDP_002

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9NDP|1|5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|C|111
9NDP|1|5|C|112
*
9NDP|1|5|G|278
9NDP|1|5|A|279
9NDP|1|5|G|280
9NDP|1|5|U|281
9NDP|1|5|C|282
9NDP|1|5|G|283
*
9NDP|1|5|C|304
9NDP|1|5|A|305
9NDP|1|5|A|306
9NDP|1|5|A|307
9NDP|1|5|G|308
9NDP|1|5|C|309
9NDP|1|5|G|310
*
9NDP|1|5|U|327
9NDP|1|5|A|328
9NDP|1|5|A|329
9NDP|1|5|G|330

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain N

Ribosomal protein L15

Chain h

eL35

Chain i

60S ribosomal protein L36