J4_9NDP_008

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9NDP|1|5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|G|2618
9NDP|1|5|G|2619
*
9NDP|1|5|U|2637
9NDP|1|5|G|2638
9NDP|1|5|U|2639
9NDP|1|5|G|2640
9NDP|1|5|A|2641
9NDP|1|5|A|2642
*
9NDP|1|5|U|2692
9NDP|1|5|G|2693
9NDP|1|5|G|2694
9NDP|1|5|A|2695
9NDP|1|5|A|2696
9NDP|1|5|A|2697
9NDP|1|5|G|2698
*
9NDP|1|5|U|2718
9NDP|1|5|C|2719

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19

Chain U

eL22

Chain g

60S ribosomal protein L34

Chain k

Large ribosomal subunit protein eL38