J4_9NDP_014
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9NDP|1|K|A|672, 9NDP|1|K|A|1083, 9NDP|1|K|C|1085, 9NDP|1|K|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9NDP|1|K|A|671
9NDP|1|K|A|672
9NDP|1|K|G|673
*
9NDP|1|K|C|1032
9NDP|1|K|G|1033
9NDP|1|K|A|1034
9NDP|1|K|A|1035
9NDP|1|K|A|1036
9NDP|1|K|G|1037
*
9NDP|1|K|C|1078
9NDP|1|K|C|1079
9NDP|1|K|A|1080
9NDP|1|K|U|1081
9NDP|1|K|A|1082
9NDP|1|K|A|1083
9NDP|1|K|A|1084
9NDP|1|K|C|1085
9NDP|1|K|G|1086
9NDP|1|K|A|1087
9NDP|1|K|U|1088
9NDP|1|K|G|1089
*
9NDP|1|K|U|1160
9NDP|1|K|U|1161
Current chains
- Chain K
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain EE
- Ribosomal protein S11
- Chain LL
- Small ribosomal subunit protein eS26
- Chain MM
- Small ribosomal subunit protein uS11
- Chain QQ
- Ribosomal protein S13
- Chain TT
- Ribosomal protein S15a
- Chain VV
- uS12
- Chain n
- eL41
- Chain p
- eL43
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