J4_9NJF_001

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9NJF|1|R1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NJF_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1406

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9NJF|1|R1|C|268
9NJF|1|R1|C|269
*
9NJF|1|R1|G|370
9NJF|1|R1|A|371
9NJF|1|R1|G|372
9NJF|1|R1|U|373
9NJF|1|R1|A|374
9NJF|1|R1|G|375
*
9NJF|1|R1|U|399
9NJF|1|R1|G|400
9NJF|1|R1|A|401
9NJF|1|R1|A|402
9NJF|1|R1|U|403
9NJF|1|R1|A|404
9NJF|1|R1|U|405
9NJF|1|R1|G|406
*
9NJF|1|R1|C|421
9NJF|1|R1|A|422
9NJF|1|R1|A|423
9NJF|1|R1|G|424

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28

Chain 9

Large ribosomal subunit protein bL9