J4_9NJF_003

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9NJF|1|R1|G|1271, 9NJF|1|R1|A|1272, 9NJF|1|R1|U|1273, 9NJF|1|R1|A|1275, 9NJF|1|R1|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NJF_003 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1083

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9NJF|1|R1|C|1270
9NJF|1|R1|G|1271
9NJF|1|R1|A|1272
9NJF|1|R1|U|1273
9NJF|1|R1|A|1274
9NJF|1|R1|A|1275
9NJF|1|R1|A|1276
*
9NJF|1|R1|U|1294
9NJF|1|R1|C|1295
*
9NJF|1|R1|G|1645
9NJF|1|R1|C|1646
9NJF|1|R1|U|1647
9NJF|1|R1|U|1648
*
9NJF|1|R1|A|2009
9NJF|1|R1|G|2010

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 17

Large ribosomal subunit protein bL17

Chain 22

Large ribosomal subunit protein uL22

Chain 32

50S ribosomal protein L32