J4_9NJF_010

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NJF_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0849

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9NJF|1|R1|G|2643
9NJF|1|R1|G|2644
9NJF|1|R1|G|2645
9NJF|1|R1|C|2646
*
9NJF|1|R1|G|2674
9NJF|1|R1|A|2675
9NJF|1|R1|C|2676
*
9NJF|1|R1|G|2731
9NJF|1|R1|G|2732
9NJF|1|R1|A|2733
9NJF|1|R1|A|2734
9NJF|1|R1|G|2735
*
9NJF|1|R1|U|2769
9NJF|1|R1|G|2770
9NJF|1|R1|C|2771

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 14

Large ribosomal subunit protein uL14

Chain 3

50S ribosomal protein L3