J4_9NJF_011

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9NJF|1|R3|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NJF_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1879

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9NJF|1|R3|G|115
9NJF|1|R3|A|116
9NJF|1|R3|G|117
9NJF|1|R3|U|118
9NJF|1|R3|A|119
9NJF|1|R3|A|120
9NJF|1|R3|U|121
9NJF|1|R3|G|122
*
9NJF|1|R3|U|239
9NJF|1|R3|G|240
*
9NJF|1|R3|C|286
9NJF|1|R3|U|287
9NJF|1|R3|A|288
9NJF|1|R3|G|289
*
9NJF|1|R3|C|311
9NJF|1|R3|C|312

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sp

Small ribosomal subunit protein bS16

Chain sq

Small ribosomal subunit protein uS17