J4_9NJF_012

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9NJF|1|R3|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NJF_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1744

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NJF|1|R3|G|142
9NJF|1|R3|A|143
9NJF|1|R3|G|144
*
9NJF|1|R3|C|178
9NJF|1|R3|A|179
9NJF|1|R3|U|180
9NJF|1|R3|A|181
9NJF|1|R3|A|182
9NJF|1|R3|C|183
9NJF|1|R3|G|184
*
9NJF|1|R3|C|193
9NJF|1|R3|C|194
9NJF|1|R3|A|195
9NJF|1|R3|A|196
9NJF|1|R3|A|197
9NJF|1|R3|G|198
*
9NJF|1|R3|U|219
9NJF|1|R3|G|220
9NJF|1|R3|C|221

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain st

30S ribosomal protein S20