J4_9NJV_001

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CAGUGUGUUUCGACACACUAUCAU*AAUGAGG

Length

45 nucleotides

Bulged bases

9NJV|1|R1|U|50, 9NJV|1|R1|U|138, 9NJV|1|R1|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJV|1|R1|C|47
9NJV|1|R1|G|48
9NJV|1|R1|A|49
9NJV|1|R1|U|50
9NJV|1|R1|G|51
9NJV|1|R1|A|52
9NJV|1|R1|A|53
9NJV|1|R1|G|54
*
9NJV|1|R1|C|116
9NJV|1|R1|G|117
9NJV|1|R1|A|118
9NJV|1|R1|A|119
9NJV|1|R1|U|120
9NJV|1|R1|G|121
*
9NJV|1|R1|C|130
9NJV|1|R1|A|131
9NJV|1|R1|G|132
9NJV|1|R1|U|133
9NJV|1|R1|G|134
9NJV|1|R1|U|135
9NJV|1|R1|G|136
9NJV|1|R1|U|137
9NJV|1|R1|U|138
9NJV|1|R1|U|139
9NJV|1|R1|C|140
9NJV|1|R1|G|141
9NJV|1|R1|A|142
9NJV|1|R1|C|143
9NJV|1|R1|A|144
9NJV|1|R1|C|145
9NJV|1|R1|A|146
9NJV|1|R1|C|147
9NJV|1|R1|U|148
9NJV|1|R1|A|149
9NJV|1|R1|U|150
9NJV|1|R1|C|151
9NJV|1|R1|A|152
9NJV|1|R1|U|153
*
9NJV|1|R1|A|172
9NJV|1|R1|A|173
9NJV|1|R1|U|174
9NJV|1|R1|G|175
9NJV|1|R1|A|176
9NJV|1|R1|G|177
9NJV|1|R1|G|178

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23

Chain 28

50S ribosomal protein L28

Chain 34

50S ribosomal protein L34