J4_9NJV_003

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9NJV|1|R1|U|653, 9NJV|1|R1|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NJV_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1591

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

9NJV|1|R1|C|601
9NJV|1|R1|A|602
9NJV|1|R1|A|603
9NJV|1|R1|G|604
*
9NJV|1|R1|C|624
9NJV|1|R1|G|625
9NJV|1|R1|A|626
9NJV|1|R1|A|627
9NJV|1|R1|G|628
*
9NJV|1|R1|C|635
9NJV|1|R1|G|636
9NJV|1|R1|A|637
9NJV|1|R1|G|638
*
9NJV|1|R1|C|650
9NJV|1|R1|G|651
9NJV|1|R1|U|652
9NJV|1|R1|U|653
9NJV|1|R1|A|654
9NJV|1|R1|A|655
9NJV|1|R1|G|656

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 35

Large ribosomal subunit protein bL35

Chain 4

Large ribosomal subunit protein uL4