3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUG*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
9NJV|1|R1|U|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9NJV_008 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.1194
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

9NJV|1|R1|C|1833
9NJV|1|R1|U|1834
9NJV|1|R1|G|1835
*
9NJV|1|R1|C|1905
9NJV|1|R1|G|1906
*
9NJV|1|R1|C|1924
9NJV|1|R1|C|1925
9NJV|1|R1|U|1926
9NJV|1|R1|A|1927
9NJV|1|R1|A|1928
9NJV|1|R1|G|1929
9NJV|1|R1|G|1930
9NJV|1|R1|U|1931
9NJV|1|R1|A|1932
9NJV|1|R1|G|1933
*
9NJV|1|R1|C|1967
9NJV|1|R1|G|1968
9NJV|1|R1|A|1969
9NJV|1|R1|A|1970
9NJV|1|R1|U|1971
9NJV|1|R1|G|1972

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L2
Chain R3
Small subunit ribosomal RNA; SSU rRNA
Chain T
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5099 s