J4_9NKL_002

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9NKL|1|R1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NKL_002 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2279

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9NKL|1|R1|C|268
9NKL|1|R1|C|269
*
9NKL|1|R1|G|370
9NKL|1|R1|A|371
9NKL|1|R1|G|372
9NKL|1|R1|U|373
9NKL|1|R1|A|374
9NKL|1|R1|G|375
*
9NKL|1|R1|U|399
9NKL|1|R1|G|400
9NKL|1|R1|A|401
9NKL|1|R1|A|402
9NKL|1|R1|U|403
9NKL|1|R1|A|404
9NKL|1|R1|U|405
9NKL|1|R1|G|406
*
9NKL|1|R1|C|421
9NKL|1|R1|A|422
9NKL|1|R1|A|423
9NKL|1|R1|G|424

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28

Chain 9

Large ribosomal subunit protein bL9