J4_9NKL_011

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9NKL|1|R3|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NKL_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2462

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9NKL|1|R3|G|115
9NKL|1|R3|A|116
9NKL|1|R3|G|117
9NKL|1|R3|U|118
9NKL|1|R3|A|119
9NKL|1|R3|A|120
9NKL|1|R3|U|121
9NKL|1|R3|G|122
*
9NKL|1|R3|U|239
9NKL|1|R3|G|240
*
9NKL|1|R3|C|286
9NKL|1|R3|U|287
9NKL|1|R3|A|288
9NKL|1|R3|G|289
*
9NKL|1|R3|C|311
9NKL|1|R3|C|312

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sp

Small ribosomal subunit protein bS16

Chain sq

Small ribosomal subunit protein uS17