J4_9NKL_012

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9NKL|1|R3|C|183, 9NKL|1|R3|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NKL_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1756

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NKL|1|R3|G|142
9NKL|1|R3|A|143
9NKL|1|R3|G|144
*
9NKL|1|R3|C|178
9NKL|1|R3|A|179
9NKL|1|R3|U|180
9NKL|1|R3|A|181
9NKL|1|R3|A|182
9NKL|1|R3|C|183
9NKL|1|R3|G|184
*
9NKL|1|R3|C|193
9NKL|1|R3|C|194
9NKL|1|R3|A|195
9NKL|1|R3|A|196
9NKL|1|R3|A|197
9NKL|1|R3|G|198
*
9NKL|1|R3|U|219
9NKL|1|R3|G|220
9NKL|1|R3|C|221

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain st

30S ribosomal protein S20