J4_9NL5_002

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9NL5|1|R1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NL5_002 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2035

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9NL5|1|R1|C|268
9NL5|1|R1|C|269
*
9NL5|1|R1|G|370
9NL5|1|R1|A|371
9NL5|1|R1|G|372
9NL5|1|R1|U|373
9NL5|1|R1|A|374
9NL5|1|R1|G|375
*
9NL5|1|R1|U|399
9NL5|1|R1|G|400
9NL5|1|R1|A|401
9NL5|1|R1|A|402
9NL5|1|R1|U|403
9NL5|1|R1|A|404
9NL5|1|R1|U|405
9NL5|1|R1|G|406
*
9NL5|1|R1|C|421
9NL5|1|R1|A|422
9NL5|1|R1|A|423
9NL5|1|R1|G|424

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28

Chain 9

Large ribosomal subunit protein bL9