J4_9NL6_001

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9NL6|1|R1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NL6_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.218

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9NL6|1|R1|C|268
9NL6|1|R1|C|269
*
9NL6|1|R1|G|370
9NL6|1|R1|A|371
9NL6|1|R1|G|372
9NL6|1|R1|U|373
9NL6|1|R1|A|374
9NL6|1|R1|G|375
*
9NL6|1|R1|U|399
9NL6|1|R1|G|400
9NL6|1|R1|A|401
9NL6|1|R1|A|402
9NL6|1|R1|U|403
9NL6|1|R1|A|404
9NL6|1|R1|U|405
9NL6|1|R1|G|406
*
9NL6|1|R1|C|421
9NL6|1|R1|A|422
9NL6|1|R1|A|423
9NL6|1|R1|G|424

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28

Chain 9

Large ribosomal subunit protein bL9