J4_9NL6_011

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9NL6|1|R3|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NL6_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2603

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9NL6|1|R3|G|115
9NL6|1|R3|A|116
9NL6|1|R3|G|117
9NL6|1|R3|U|118
9NL6|1|R3|A|119
9NL6|1|R3|A|120
9NL6|1|R3|U|121
9NL6|1|R3|G|122
*
9NL6|1|R3|U|239
9NL6|1|R3|G|240
*
9NL6|1|R3|C|286
9NL6|1|R3|U|287
9NL6|1|R3|A|288
9NL6|1|R3|G|289
*
9NL6|1|R3|C|311
9NL6|1|R3|C|312

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sp

Small ribosomal subunit protein bS16

Chain sq

Small ribosomal subunit protein uS17