J4_9NL6_012

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9NL6|1|R3|C|183, 9NL6|1|R3|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NL6_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1557

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NL6|1|R3|G|142
9NL6|1|R3|A|143
9NL6|1|R3|G|144
*
9NL6|1|R3|C|178
9NL6|1|R3|A|179
9NL6|1|R3|U|180
9NL6|1|R3|A|181
9NL6|1|R3|A|182
9NL6|1|R3|C|183
9NL6|1|R3|G|184
*
9NL6|1|R3|C|193
9NL6|1|R3|C|194
9NL6|1|R3|A|195
9NL6|1|R3|A|196
9NL6|1|R3|A|197
9NL6|1|R3|G|198
*
9NL6|1|R3|U|219
9NL6|1|R3|G|220
9NL6|1|R3|C|221

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain st

30S ribosomal protein S20