J4_9NLB_002

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9NLB|1|R1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLB_002 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1764

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9NLB|1|R1|C|268
9NLB|1|R1|C|269
*
9NLB|1|R1|G|370
9NLB|1|R1|A|371
9NLB|1|R1|G|372
9NLB|1|R1|U|373
9NLB|1|R1|A|374
9NLB|1|R1|G|375
*
9NLB|1|R1|U|399
9NLB|1|R1|G|400
9NLB|1|R1|A|401
9NLB|1|R1|A|402
9NLB|1|R1|U|403
9NLB|1|R1|A|404
9NLB|1|R1|U|405
9NLB|1|R1|G|406
*
9NLB|1|R1|C|421
9NLB|1|R1|A|422
9NLB|1|R1|A|423
9NLB|1|R1|G|424

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28

Chain 9

Large ribosomal subunit protein bL9