J4_9NLB_013

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9NLB|1|R3|C|183, 9NLB|1|R3|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLB_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1918

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NLB|1|R3|G|142
9NLB|1|R3|A|143
9NLB|1|R3|G|144
*
9NLB|1|R3|C|178
9NLB|1|R3|A|179
9NLB|1|R3|U|180
9NLB|1|R3|A|181
9NLB|1|R3|A|182
9NLB|1|R3|C|183
9NLB|1|R3|G|184
*
9NLB|1|R3|C|193
9NLB|1|R3|C|194
9NLB|1|R3|A|195
9NLB|1|R3|A|196
9NLB|1|R3|A|197
9NLB|1|R3|G|198
*
9NLB|1|R3|U|219
9NLB|1|R3|G|220
9NLB|1|R3|C|221

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain st

30S ribosomal protein S20