J4_9NLE_002

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9NLE|1|R1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLE_002 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1908

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9NLE|1|R1|C|268
9NLE|1|R1|C|269
*
9NLE|1|R1|G|370
9NLE|1|R1|A|371
9NLE|1|R1|G|372
9NLE|1|R1|U|373
9NLE|1|R1|A|374
9NLE|1|R1|G|375
*
9NLE|1|R1|U|399
9NLE|1|R1|G|400
9NLE|1|R1|A|401
9NLE|1|R1|A|402
9NLE|1|R1|U|403
9NLE|1|R1|A|404
9NLE|1|R1|U|405
9NLE|1|R1|G|406
*
9NLE|1|R1|C|421
9NLE|1|R1|A|422
9NLE|1|R1|A|423
9NLE|1|R1|G|424

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28

Chain 9

Large ribosomal subunit protein bL9