J4_9NLE_004

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9NLE|1|R1|G|1271, 9NLE|1|R1|A|1272, 9NLE|1|R1|U|1273, 9NLE|1|R1|A|1275, 9NLE|1|R1|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLE_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0969

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9NLE|1|R1|C|1270
9NLE|1|R1|G|1271
9NLE|1|R1|A|1272
9NLE|1|R1|U|1273
9NLE|1|R1|A|1274
9NLE|1|R1|A|1275
9NLE|1|R1|A|1276
*
9NLE|1|R1|U|1294
9NLE|1|R1|C|1295
*
9NLE|1|R1|G|1645
9NLE|1|R1|C|1646
9NLE|1|R1|U|1647
9NLE|1|R1|U|1648
*
9NLE|1|R1|A|2009
9NLE|1|R1|G|2010

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 17

Large ribosomal subunit protein bL17

Chain 22

Large ribosomal subunit protein uL22

Chain 32

50S ribosomal protein L32