J4_9NLE_013

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9NLE|1|R3|C|183, 9NLE|1|R3|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLE_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1699

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NLE|1|R3|G|142
9NLE|1|R3|A|143
9NLE|1|R3|G|144
*
9NLE|1|R3|C|178
9NLE|1|R3|A|179
9NLE|1|R3|U|180
9NLE|1|R3|A|181
9NLE|1|R3|A|182
9NLE|1|R3|C|183
9NLE|1|R3|G|184
*
9NLE|1|R3|C|193
9NLE|1|R3|C|194
9NLE|1|R3|A|195
9NLE|1|R3|A|196
9NLE|1|R3|A|197
9NLE|1|R3|G|198
*
9NLE|1|R3|U|219
9NLE|1|R3|G|220
9NLE|1|R3|C|221

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain st

30S ribosomal protein S20