3D structure

PDB id
9NLE (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GU(4SU)G*CGU*AAGAUCG*CC
Length
16 nucleotides
Bulged bases
9NLE|1|T|U|7, 9NLE|1|T|U|47, 9NLE|1|T|C|48
QA status
Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9NLE_016 not in the Motif Atlas
Homologous match to J4_3WQY_001
Geometric discrepancy: 0.2285
The information below is about J4_3WQY_001
Detailed Annotation
tRNA junction
Broad Annotation
No text annotation
Motif group
J4_58311.1
Basepair signature
cWW-F-cWW-cWW-cHS-F-cWW-cWW
Number of instances in this motif group
30

Unit IDs

9NLE|1|T|G|6
9NLE|1|T|U|7
9NLE|1|T|4SU|8
9NLE|1|T|G|9
*
9NLE|1|T|C|25
9NLE|1|T|G|26
9NLE|1|T|U|27
*
9NLE|1|T|A|43
9NLE|1|T|A|44
9NLE|1|T|G|45
9NLE|1|T|A|46
9NLE|1|T|U|47
9NLE|1|T|C|48
9NLE|1|T|G|49
*
9NLE|1|T|C|65
9NLE|1|T|C|66

Current chains

Chain T
tRNA

Nearby chains

Chain 16
50S ribosomal protein L16
Chain R1
Large subunit ribosomal RNA; LSU rRNA
Chain R3
Small subunit ribosomal RNA; SSU rRNA
Chain sm
30S ribosomal protein S13

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2227 s