J4_9NLF_001

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9NLF|1|R1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLF_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1326

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9NLF|1|R1|C|268
9NLF|1|R1|C|269
*
9NLF|1|R1|G|370
9NLF|1|R1|A|371
9NLF|1|R1|G|372
9NLF|1|R1|U|373
9NLF|1|R1|A|374
9NLF|1|R1|G|375
*
9NLF|1|R1|U|399
9NLF|1|R1|G|400
9NLF|1|R1|A|401
9NLF|1|R1|A|402
9NLF|1|R1|U|403
9NLF|1|R1|A|404
9NLF|1|R1|U|405
9NLF|1|R1|G|406
*
9NLF|1|R1|C|421
9NLF|1|R1|A|422
9NLF|1|R1|A|423
9NLF|1|R1|G|424

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28

Chain 9

Large ribosomal subunit protein bL9