J4_9NLF_011

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9NLF|1|R3|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLF_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2625

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9NLF|1|R3|G|115
9NLF|1|R3|A|116
9NLF|1|R3|G|117
9NLF|1|R3|U|118
9NLF|1|R3|A|119
9NLF|1|R3|A|120
9NLF|1|R3|U|121
9NLF|1|R3|G|122
*
9NLF|1|R3|U|239
9NLF|1|R3|G|240
*
9NLF|1|R3|C|286
9NLF|1|R3|U|287
9NLF|1|R3|A|288
9NLF|1|R3|G|289
*
9NLF|1|R3|C|311
9NLF|1|R3|C|312

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sp

Small ribosomal subunit protein bS16

Chain sq

Small ribosomal subunit protein uS17