J4_9NLH_001
3D structure
- PDB id
- 9NLH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Initiation complex with YheS-EQ2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CC*GAGUAG*UGAAUAUG*CAAG
- Length
- 20 nucleotides
- Bulged bases
- 9NLH|1|R1|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9NLH_001 not in the Motif Atlas
- Homologous match to J4_5J7L_018
- Geometric discrepancy: 0.1138
- The information below is about J4_5J7L_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9NLH|1|R1|C|268
9NLH|1|R1|C|269
*
9NLH|1|R1|G|370
9NLH|1|R1|A|371
9NLH|1|R1|G|372
9NLH|1|R1|U|373
9NLH|1|R1|A|374
9NLH|1|R1|G|375
*
9NLH|1|R1|U|399
9NLH|1|R1|G|400
9NLH|1|R1|A|401
9NLH|1|R1|A|402
9NLH|1|R1|U|403
9NLH|1|R1|A|404
9NLH|1|R1|U|405
9NLH|1|R1|G|406
*
9NLH|1|R1|C|421
9NLH|1|R1|A|422
9NLH|1|R1|A|423
9NLH|1|R1|G|424
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 28
- 50S ribosomal protein L28
- Chain 9
- Large ribosomal subunit protein bL9
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