J4_9NLH_010

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLH_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0855

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9NLH|1|R1|G|2643
9NLH|1|R1|G|2644
9NLH|1|R1|G|2645
9NLH|1|R1|C|2646
*
9NLH|1|R1|G|2674
9NLH|1|R1|A|2675
9NLH|1|R1|C|2676
*
9NLH|1|R1|G|2731
9NLH|1|R1|G|2732
9NLH|1|R1|A|2733
9NLH|1|R1|A|2734
9NLH|1|R1|G|2735
*
9NLH|1|R1|U|2769
9NLH|1|R1|G|2770
9NLH|1|R1|C|2771

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 14

50S ribosomal protein L14

Chain 3

50S ribosomal protein L3