J4_9NLH_012

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9NLH|1|R3|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLH_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1564

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NLH|1|R3|G|142
9NLH|1|R3|A|143
9NLH|1|R3|G|144
*
9NLH|1|R3|C|178
9NLH|1|R3|A|179
9NLH|1|R3|U|180
9NLH|1|R3|A|181
9NLH|1|R3|A|182
9NLH|1|R3|C|183
9NLH|1|R3|G|184
*
9NLH|1|R3|C|193
9NLH|1|R3|C|194
9NLH|1|R3|A|195
9NLH|1|R3|A|196
9NLH|1|R3|A|197
9NLH|1|R3|G|198
*
9NLH|1|R3|U|219
9NLH|1|R3|G|220
9NLH|1|R3|C|221

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain st

30S ribosomal protein S20