J4_9NLJ_002

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9NLJ|1|R1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLJ_002 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1693

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9NLJ|1|R1|C|268
9NLJ|1|R1|C|269
*
9NLJ|1|R1|G|370
9NLJ|1|R1|A|371
9NLJ|1|R1|G|372
9NLJ|1|R1|U|373
9NLJ|1|R1|A|374
9NLJ|1|R1|G|375
*
9NLJ|1|R1|U|399
9NLJ|1|R1|G|400
9NLJ|1|R1|A|401
9NLJ|1|R1|A|402
9NLJ|1|R1|U|403
9NLJ|1|R1|A|404
9NLJ|1|R1|U|405
9NLJ|1|R1|G|406
*
9NLJ|1|R1|C|421
9NLJ|1|R1|A|422
9NLJ|1|R1|A|423
9NLJ|1|R1|G|424

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28

Chain 9

Large ribosomal subunit protein bL9