J4_9NLJ_006

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9NLJ|1|R1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLJ_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0987

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9NLJ|1|R1|U|1313
9NLJ|1|R1|C|1314
*
9NLJ|1|R1|G|1338
9NLJ|1|R1|G|1339
9NLJ|1|R1|U|1340
9NLJ|1|R1|G|1341
9NLJ|1|R1|A|1342
9NLJ|1|R1|G|1343
*
9NLJ|1|R1|C|1404
9NLJ|1|R1|U|1405
*
9NLJ|1|R1|A|1597
9NLJ|1|R1|A|1598
9NLJ|1|R1|U|1599
9NLJ|1|R1|C|1600
9NLJ|1|R1|G|1601
9NLJ|1|R1|U|1602
9NLJ|1|R1|A|1603

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23