J4_9NLJ_013

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9NLJ|1|R3|C|183, 9NLJ|1|R3|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLJ_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.174

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NLJ|1|R3|G|142
9NLJ|1|R3|A|143
9NLJ|1|R3|G|144
*
9NLJ|1|R3|C|178
9NLJ|1|R3|A|179
9NLJ|1|R3|U|180
9NLJ|1|R3|A|181
9NLJ|1|R3|A|182
9NLJ|1|R3|C|183
9NLJ|1|R3|G|184
*
9NLJ|1|R3|C|193
9NLJ|1|R3|C|194
9NLJ|1|R3|A|195
9NLJ|1|R3|A|196
9NLJ|1|R3|A|197
9NLJ|1|R3|G|198
*
9NLJ|1|R3|U|219
9NLJ|1|R3|G|220
9NLJ|1|R3|C|221

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain st

30S ribosomal protein S20