J4_9NLN_001

3D structure

PDB id

9NLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Coxakievirus B3 IRES Domain V in Complex with a Fab

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AG*UC*GG*CU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9NLN|1|C|A|35
9NLN|1|C|G|36
*
9NLN|1|C|U|67
9NLN|1|C|C|68
*
9NLN|1|C|G|74
9NLN|1|C|G|75
*
9NLN|1|C|C|80
9NLN|1|C|U|81

Current chains

Chain C

RNA (CVB3 IRES Domain V)

Nearby chains

Chain H

BL3-6 Fab Heavy Chain