J4_9NLQ_001

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9NLQ|1|R1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLQ_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1773

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9NLQ|1|R1|C|268
9NLQ|1|R1|C|269
*
9NLQ|1|R1|G|370
9NLQ|1|R1|A|371
9NLQ|1|R1|G|372
9NLQ|1|R1|U|373
9NLQ|1|R1|A|374
9NLQ|1|R1|G|375
*
9NLQ|1|R1|U|399
9NLQ|1|R1|G|400
9NLQ|1|R1|A|401
9NLQ|1|R1|A|402
9NLQ|1|R1|U|403
9NLQ|1|R1|A|404
9NLQ|1|R1|U|405
9NLQ|1|R1|G|406
*
9NLQ|1|R1|C|421
9NLQ|1|R1|A|422
9NLQ|1|R1|A|423
9NLQ|1|R1|G|424

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28

Chain 9

Large ribosomal subunit protein bL9