J4_9NLQ_005

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9NLQ|1|R1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLQ_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0828

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9NLQ|1|R1|U|1313
9NLQ|1|R1|C|1314
*
9NLQ|1|R1|G|1338
9NLQ|1|R1|G|1339
9NLQ|1|R1|U|1340
9NLQ|1|R1|G|1341
9NLQ|1|R1|A|1342
9NLQ|1|R1|G|1343
*
9NLQ|1|R1|C|1404
9NLQ|1|R1|U|1405
*
9NLQ|1|R1|A|1597
9NLQ|1|R1|A|1598
9NLQ|1|R1|U|1599
9NLQ|1|R1|C|1600
9NLQ|1|R1|G|1601
9NLQ|1|R1|U|1602
9NLQ|1|R1|A|1603

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23