J4_9NLQ_010

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLQ_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0905

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9NLQ|1|R1|G|2643
9NLQ|1|R1|G|2644
9NLQ|1|R1|G|2645
9NLQ|1|R1|C|2646
*
9NLQ|1|R1|G|2674
9NLQ|1|R1|A|2675
9NLQ|1|R1|C|2676
*
9NLQ|1|R1|G|2731
9NLQ|1|R1|G|2732
9NLQ|1|R1|A|2733
9NLQ|1|R1|A|2734
9NLQ|1|R1|G|2735
*
9NLQ|1|R1|U|2769
9NLQ|1|R1|G|2770
9NLQ|1|R1|C|2771

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 14

50S ribosomal protein L14

Chain 3

50S ribosomal protein L3