J4_9NLQ_012

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9NLQ|1|R3|C|183, 9NLQ|1|R3|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLQ_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1927

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NLQ|1|R3|G|142
9NLQ|1|R3|A|143
9NLQ|1|R3|G|144
*
9NLQ|1|R3|C|178
9NLQ|1|R3|A|179
9NLQ|1|R3|U|180
9NLQ|1|R3|A|181
9NLQ|1|R3|A|182
9NLQ|1|R3|C|183
9NLQ|1|R3|G|184
*
9NLQ|1|R3|C|193
9NLQ|1|R3|C|194
9NLQ|1|R3|A|195
9NLQ|1|R3|A|196
9NLQ|1|R3|A|197
9NLQ|1|R3|G|198
*
9NLQ|1|R3|U|219
9NLQ|1|R3|G|220
9NLQ|1|R3|C|221

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain st

30S ribosomal protein S20