J4_9NLS_001

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9NLS|1|R1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLS_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1617

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9NLS|1|R1|C|268
9NLS|1|R1|C|269
*
9NLS|1|R1|G|370
9NLS|1|R1|A|371
9NLS|1|R1|G|372
9NLS|1|R1|U|373
9NLS|1|R1|A|374
9NLS|1|R1|G|375
*
9NLS|1|R1|U|399
9NLS|1|R1|G|400
9NLS|1|R1|A|401
9NLS|1|R1|A|402
9NLS|1|R1|U|403
9NLS|1|R1|A|404
9NLS|1|R1|U|405
9NLS|1|R1|G|406
*
9NLS|1|R1|C|421
9NLS|1|R1|A|422
9NLS|1|R1|A|423
9NLS|1|R1|G|424

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28

Chain 9

Large ribosomal subunit protein bL9